PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00057.1.g00540.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 433aa    MW: 46511.7 Da    PI: 5.8711
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00057.1.g00540.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.11.2e-30201259259
                                   --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                   +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY+++Hnh+
  Zpz_sc00057.1.g00540.1.am.mk 201 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPSMLVITYTSDHNHP 259
                                   699************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.742195261IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.6E-31195261IPR003657WRKY domain
SuperFamilySSF1182904.71E-26198261IPR003657WRKY domain
SMARTSM007746.3E-37200260IPR003657WRKY domain
PfamPF031061.5E-25202259IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MCDFFWPSLA DEGDLADVVR ASLQQLPAAA TPASATELVS ADAHGHLPAE EVERFLPTHG  60
VSCRGNHDHG DEVHLQPQWQ LVHGNGMGVT VGSSGGGGSC DPLLLHSSPS YPLLEPQQTE  120
GLIRHVMSGP TPQLLGVGEG DCDVAALEMD EQGLDMAMDP HAPAIKRRKS QTKKVVCIPA  180
PTAAPPGVGG RPSTSGEVVP SDLWAWRKYG QKPIKGSPYP RGYYRCSSSK GCSARKQVER  240
SRTDPSMLVI TYTSDHNHPW PTQRNVLAGS TRPAAAAKSQ HSTAATVPPP PTRHHHTIGT  300
VGDSATSSST GDNNVHQQQV PKQEVLDVMD HPMPEQGAAA VHDLDMFAET DGALNIMQTF  360
NFNPQKQQQQ QQLATAADGD DDDLLQDDKQ QLLDPFSFNF FDWRRAEGVY CRQAMVQANK  420
ADGIPGITGG GRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-17187261477Probable WRKY transcription factor 4
2lex_A2e-17187261477Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0187272e-72AC018727.10 Oryza sativa chromosome 10 BAC OSJNBa0056G17 genomic sequence, complete sequence.
GenBankAP0149662e-72AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126182e-72CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
GenBankKC9546102e-72KC954610.1 Oryza sativa Japonica Group cultivar Dongjin WRKY2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008658838.11e-108PREDICTED: probable WRKY transcription factor 35
TrEMBLA0A096TIF51e-108A0A096TIF5_MAIZE; Uncharacterized protein
STRINGGRMZM2G383594_P011e-108(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118473039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.17e-54WRKY DNA-binding protein 35